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» On the maximum quartet distance between phylogenetic trees
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APBC
2004
132views Bioinformatics» more  APBC 2004»
14 years 11 months ago
Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques
Undiscovered relationships in a data set may confound analyses, particularly those that assume data independence. Such problems occur when characters used for phylogenetic analyse...
Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Gh...
BMCBI
2008
125views more  BMCBI 2008»
14 years 9 months ago
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions
Background: Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. Howe...
Martin Bader, Mohamed Ibrahim Abouelhoda, Enno Ohl...
BMCBI
2006
137views more  BMCBI 2006»
14 years 9 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
ACL
2012
13 years 11 hour ago
Extracting Narrative Timelines as Temporal Dependency Structures
We propose a new approach to characterizing the timeline of a text: temporal dependency structures, where all the events of a narrative are linked via partial ordering relations l...
Oleksandr Kolomiyets, Steven Bethard, Marie-Franci...
BMCBI
2010
118views more  BMCBI 2010»
14 years 9 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...