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» On the maximum quartet distance between phylogenetic trees
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DM
2006
122views more  DM 2006»
14 years 9 months ago
Labeling trees with a condition at distance two
An L(h, k)-labeling of a graph G is an integer labeling of vertices of G, such that adjacent vertices have labels which differ by at least h, and vertices at distance two have lab...
Tiziana Calamoneri, Andrzej Pelc, Rossella Petresc...
BMCBI
2007
165views more  BMCBI 2007»
14 years 9 months ago
Direct maximum parsimony phylogeny reconstruction from genotype data
Background: Maximum parsimony phylogenetic tree reconstruction from genetic variation data is a fundamental problem in computational genetics with many practical applications in p...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
BMCBI
2008
139views more  BMCBI 2008»
14 years 9 months ago
A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joinin
Background: Inference of evolutionary trees using the maximum likelihood principle is NP-hard. Therefore, all practical methods rely on heuristics. The topological transformations...
Maozu Guo, Jian-Fu Li, Yang Liu
BMCBI
2008
104views more  BMCBI 2008»
14 years 9 months ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...
BMCBI
2005
93views more  BMCBI 2005»
14 years 9 months ago
Multiple sequence alignment accuracy and evolutionary distance estimation
Background: Sequence alignment is a common tool in bioinformatics and comparative genomics. It is generally assumed that multiple sequence alignment yields better results than pai...
Michael S. Rosenberg