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142
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BMCBI
2005
113views more  BMCBI 2005»
15 years 16 days ago
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
Background: Biological processes are carried out by coordinated modules of interacting molecules. As clustering methods demonstrate that genes with similar expression display incr...
Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte
JCC
2007
121views more  JCC 2007»
15 years 16 days ago
Speeding up parallel GROMACS on high-latency networks
: We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clust...
Carsten Kutzner, David van der Spoel, Martin Fechn...
126
Voted
BMCBI
2004
134views more  BMCBI 2004»
15 years 14 days ago
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
Ricardo Z. N. Vêncio, Helena Brentani, Diogo...
97
Voted
ECOI
2007
101views more  ECOI 2007»
15 years 12 days ago
Reasoning about taxonomies in first-order logic
Experts often disagree about the organization of biological taxa. The shifting definitions of taxonomic names complicate otherwise simple queries concerning these taxa. For examp...
David Thau, Bertram Ludäscher
101
Voted
JSYML
1998
61views more  JSYML 1998»
15 years 8 days ago
Superdestructibility: A Dual to Laver's Indestructibility
Abstract. After small forcing, any <κ-closed forcing will destroy the supercompactness and even the strong compactness of κ. In a delightful argument, Laver [L78] proved that ...
Joel David Hamkins, Saharon Shelah
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