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» On-Line Linear-Time Construction of Word Suffix Trees
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IPL
2010
71views more  IPL 2010»
13 years 4 months ago
New common ancestor problems in trees and directed acyclic graphs
We derive a new generalization of lowest common ancestors (LCAs) in dags, called the lowest single common ancestor (LSCA). We show how to preprocess a static dag in linear time su...
Johannes Fischer, Daniel H. Huson
CAV
2004
Springer
130views Hardware» more  CAV 2004»
13 years 10 months ago
Global Model-Checking of Infinite-State Systems
Abstract. We extend the automata-theoretic framework for reasoning about infinitestate sequential systems to handle also the global model-checking problem. Our framework is based o...
Nir Piterman, Moshe Y. Vardi
RECOMB
2005
Springer
14 years 6 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
JCB
2006
124views more  JCB 2006»
13 years 6 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
SODA
2010
ACM
202views Algorithms» more  SODA 2010»
14 years 3 months ago
Counting Inversions, Offline Orthogonal Range Counting, and Related Problems
We give an O(n lg n)-time algorithm for counting the number of inversions in a permutation on n elements. This improves a long-standing previous bound of O(n lg n/ lg lg n) that ...
Timothy M. Chan, Mihai Patrascu