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RECOMB
2005
Springer
15 years 11 months ago
An Interaction-Dependent Model for Transcription Factor Binding
Transcriptional regulation is accomplished by several transcription factor proteins that bind to specific DNA elements in the relative vicinity of the gene, and interact with each ...
Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli
RECOMB
2002
Springer
15 years 11 months ago
Probabilistic hierarchical clustering for biological data
Biological data, such as gene expression profiles or protein sequences, is often organized in a hierarchy of classes, where the instances assigned to "nearby" classes in...
Eran Segal, Daphne Koller
CADE
2006
Springer
15 years 11 months ago
CEL - A Polynomial-Time Reasoner for Life Science Ontologies
CEL (Classifier for EL) is a reasoner for the small description logic EL+ which can be used to compute the subsumption hierarchy induced by EL+ ontologies. The most distinguishing ...
Franz Baader, Carsten Lutz, Boontawee Suntisrivara...
CADE
2005
Springer
15 years 11 months ago
Reflecting Proofs in First-Order Logic with Equality
Our general goal is to provide better automation in interactive proof assistants such as Coq. We present an interpreter of proof traces in first-order multi-sorted logic with equal...
Evelyne Contejean, Pierre Corbineau
ICALP
2009
Springer
15 years 11 months ago
LTL Path Checking Is Efficiently Parallelizable
We present an AC1 (logDCFL) algorithm for checking LTL formulas over finite paths, thus establishing that the problem can be efficiently parallelized. Our construction provides a f...
Lars Kuhtz, Bernd Finkbeiner