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» Ontologies and databases: myths and challenges
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BMCBI
2007
207views more  BMCBI 2007»
14 years 10 months ago
Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering
Background: Many important high throughput projects use in situ hybridization and may require the analysis of images of spatial cross sections of organisms taken with cellular lev...
Manjunatha Jagalur, Chris Pal, Erik G. Learned-Mil...
BMCBI
2008
117views more  BMCBI 2008»
14 years 10 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
CIKM
2009
Springer
15 years 4 months ago
MKEM: a multi-level knowledge emergence model for mining undiscovered public knowledge
Background: Since Swanson proposed the Undiscovered Public Knowledge (UPK) model, there have been many approaches to uncover UPK by mining the biomedical literature. These earlier...
Ali Zeeshan Ijaz, Min Song, Doheon Lee
TREC
2004
14 years 11 months ago
Concept Extraction and Synonymy Management for Biomedical Information Retrieval
This paper reports on work done for the Genomics Track at TREC 2004 by ConverSpeech LLC in conjunction with scientists at the Saccharomyces Genome Database (SGD), the model organi...
Colleen E. Crangle, Alex Zbyslaw, J. Michael Cherr...
BMCBI
2005
117views more  BMCBI 2005»
14 years 10 months ago
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Background: The Gene Ontology Annotation (GOA) database http://www.ebi.ac.uk/GOA aims to provide high-quality supplementary GO annotation to proteins in the UniProt Knowledgebase....
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian...