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» Ontologies and databases: myths and challenges
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SIGIR
2005
ACM
15 years 3 months ago
An application of text categorization methods to gene ontology annotation
This paper describes an application of IR and text categorization methods to a highly practical problem in biomedicine, specifically, Gene Ontology (GO) annotation. GO annotation...
Kazuhiro Seki, Javed Mostafa
SEMWEB
2010
Springer
14 years 8 months ago
Optimizing Enterprise-Scale OWL 2 RL Reasoning in a Relational Database System
OWL 2 RL was standardized as a less expressive but scalable subset of OWL 2 that allows a forward-chaining implementation. However, building an enterprise-scale forward-chaining ba...
Vladimir Kolovski, Zhe Wu, George Eadon
DEXAW
2003
IEEE
117views Database» more  DEXAW 2003»
15 years 3 months ago
Toward Hypermedia Design Methods for the Semantic Web
Hypermedia design methods have been proposed for the development of hypermedia and web applications. Nowadays, we face up to another challenge, the Semantic Web, in order to repre...
Susana Montero, Paloma Díaz, Ignacio Aedo, ...
BMCBI
2008
116views more  BMCBI 2008»
14 years 10 months ago
Gene Ontology annotations: what they mean and where they come from
To address the challenges of information integration and retrieval, the computational genomics community increasingly has come to rely on the methodology of creating annotations o...
David P. Hill, Barry Smith, Monica S. McAndrews-Hi...
BMCBI
2010
155views more  BMCBI 2010»
14 years 10 months ago
FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases
Background: Whole genome association studies using highly dense single nucleotide polymorphisms (SNPs) are a set of methods to identify DNA markers associated with variation in a ...
Stephen J. Goodswen, Cedric Gondro, Nathan S. Wats...