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» Ontology mapping using background knowledge
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BMCBI
2005
113views more  BMCBI 2005»
14 years 11 months ago
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
Background: Biological processes are carried out by coordinated modules of interacting molecules. As clustering methods demonstrate that genes with similar expression display incr...
Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte
BMCBI
2008
147views more  BMCBI 2008»
14 years 11 months ago
Assessment of disease named entity recognition on a corpus of annotated sentences
Background: In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and ...
Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz,...
BMCBI
2010
163views more  BMCBI 2010»
14 years 11 months ago
Integration of open access literature into the RCSB Protein Data Bank using BioLit
Background: Biological data have traditionally been stored and made publicly available through a variety of on-line databases, whereas biological knowledge has traditionally been ...
Andreas Prlic, Marco A. Martinez, Dimitris Dimitro...
ATAL
2007
Springer
15 years 3 months ago
Workflow coordination for service-oriented multiagent systems
From a multiagent viewpoint, a workflow is a dynamic set of tasks performed by a set of agents to reach a shared goal. We show herein that commitments among agents can be used to ...
Jiangbo Dang, Jingshan Huang, Michael N. Huhns
BMCBI
2006
129views more  BMCBI 2006»
14 years 11 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...