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NAR
2011
305views Computer Vision» more  NAR 2011»
14 years 9 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 9 months ago
The UCSC Genome Browser database: update 2011
The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of o...
Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, ...
GCB
2007
Springer
134views Biometrics» more  GCB 2007»
16 years 6 days ago
An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases
Since the advent of public data repositories for proteomics data, readily accessible results from high-throughput experiments have been accumulating steadily. Several large-scale p...
Sebastian Klie, Lennart Martens, Juan Antonio Vizc...
BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
NAR
2007
132views more  NAR 2007»
15 years 5 months ago
TRED: a transcriptional regulatory element database, new entries and other development
Transcriptional factors (TFs) and many of their target genes are involved in gene regulation at the level of transcription. To decipher gene regulatory networks (GRNs) we require ...
C. Jiang, Zhenyu Xuan, Fang Zhao, Michael Q. Zhang