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» Ontology-based Knowledge Representation for Bioinformatics
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JMLR
2006
112views more  JMLR 2006»
15 years 5 months ago
Kernels on Prolog Proof Trees: Statistical Learning in the ILP Setting
We develop kernels for measuring the similarity between relational instances using background knowledge expressed in first-order logic. The method allows us to bridge the gap betw...
Andrea Passerini, Paolo Frasconi, Luc De Raedt
BIB
2006
169views more  BIB 2006»
15 years 5 months ago
Bio-ontologies: current trends and future directions
: In recent years, as a knowledge-based discipline, bioinformatics has moved to make its knowledge more computationally amenable. After its beginnings in the disciplines as a techn...
Olivier Bodenreider, Robert Stevens
BMCBI
2008
106views more  BMCBI 2008»
15 years 5 months ago
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Background: Bio-ontologies are key elements of knowledge management in bioinformatics. Rich and rigorous bio-ontologies should represent biological knowledge with high fidelity an...
Mikel Egaña Aranguren, Erick Antezana, Mart...
DILS
2005
Springer
15 years 11 months ago
Support for BioIndexing in BLASTgres
The ability to perform genome-wide and cross-genome data analyses can dramatically reduce the time required for new biological discoveries. This raises important issues in bioinfor...
Ruey-Lung Hsiao, Douglas Stott Parker Jr., Hung-ch...
EDBT
2004
ACM
230views Database» more  EDBT 2004»
16 years 5 months ago
Flexible Integration of Molecular-Biological Annotation Data: The GenMapper Approach
Molecular-biological annotation data is continuously being collected, curated and made accessible in numerous public data sources. Integration of this data is a major challenge in ...
Hong Hai Do, Erhard Rahm