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BMCBI
2011
14 years 6 months ago
Bio: : Phylo - phyloinformatic analysis using Perl
Background: Phyloinformatic analyses involve large amounts of data and metadata of complex structure. Collecting, processing, analyzing, visualizing and summarizing these data and...
Rutger A. Vos, Jason Caravas, Klaas Hartmann, Mark...
ASPLOS
2012
ACM
13 years 7 months ago
Applying transactional memory to concurrency bugs
Multithreaded programs often suffer from synchronization bugs such as atomicity violations and deadlocks. These bugs arise from complicated locking strategies and ad hoc synchroni...
Haris Volos, Andres Jaan Tack, Michael M. Swift, S...
PPOPP
2012
ACM
13 years 7 months ago
PARRAY: a unifying array representation for heterogeneous parallelism
This paper introduces a programming interface called PARRAY (or Parallelizing ARRAYs) that supports system-level succinct programming for heterogeneous parallel systems like GPU c...
Yifeng Chen, Xiang Cui, Hong Mei
EUROSYS
2008
ACM
15 years 9 months ago
Protectit: trusted distributed services operating on sensitive data
Protecting shared sensitive information is a key requirement for today’s distributed applications. Our research uses virtualization technologies to create and maintain trusted d...
Jiantao Kong, Karsten Schwan, Min Lee, Mustaque Ah...
IEEEPACT
2007
IEEE
15 years 6 months ago
Performance Portable Optimizations for Loops Containing Communication Operations
Effective use of communication networks is critical to the performance and scalability of parallel applications. Partitioned Global Address Space languages like UPC bring the pro...
Costin Iancu, Wei Chen, Katherine A. Yelick