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» Optimal Protein Threading by Cost-Splitting
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WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
15 years 4 months ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...
BMCBI
2010
112views more  BMCBI 2010»
14 years 11 months ago
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design
Background: Empirical scoring functions have proven useful in protein structure modeling. Most such scoring functions depend on protein side chain conformations. However, backbone...
Andrew J. Bordner
ICASSP
2007
IEEE
15 years 5 months ago
Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure
Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to a...
Zafer Aydin, Hakan Erdogan, Yucel Altunbasak
137
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PPOPP
2003
ACM
15 years 4 months ago
Optimizing data aggregation for cluster-based internet services
Large-scale cluster-based Internet services often host partitioned datasets to provide incremental scalability. The aggregation of results produced from multiple partitions is a f...
Lingkun Chu, Hong Tang, Tao Yang, Kai Shen