Given a graph G = (V, E) with n vertices, m edges and maximum vertex degree ∆, the load distribution of a coloring ϕ : V → {red, blue} is a pair dϕ = (rϕ, bϕ), where rϕ i...
Nitin Ahuja, Andreas Baltz, Benjamin Doerr, Ales P...
Abstract. In this paper, we show that algorithms on tree decompositions can be made faster with the use of generalisations of fast subset convolution. Amongst others, this gives al...
Johan M. M. van Rooij, Hans L. Bodlaender, Peter R...
We propose two Euclidean minimum spanning tree based clustering algorithms — one a k-constrained, and the other an unconstrained algorithm. Our k-constrained clustering algorith...
We describe algorithms to explore the space of all possible reconciliations between a gene tree and a species tree. We propose an algorithm for generating a random reconciliation, ...
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...