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WAOA
2005
Springer
142views Algorithms» more  WAOA 2005»
15 years 11 months ago
On the Minimum Load Coloring Problem
Given a graph G = (V, E) with n vertices, m edges and maximum vertex degree ∆, the load distribution of a coloring ϕ : V → {red, blue} is a pair dϕ = (rϕ, bϕ), where rϕ i...
Nitin Ahuja, Andreas Baltz, Benjamin Doerr, Ales P...
ESA
2009
Springer
112views Algorithms» more  ESA 2009»
16 years 21 days ago
Dynamic Programming on Tree Decompositions Using Generalised Fast Subset Convolution
Abstract. In this paper, we show that algorithms on tree decompositions can be made faster with the use of generalisations of fast subset convolution. Amongst others, this gives al...
Johan M. M. van Rooij, Hans L. Bodlaender, Peter R...
154
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ICTAI
2006
IEEE
16 years 5 days ago
Minimum Spanning Tree Based Clustering Algorithms
We propose two Euclidean minimum spanning tree based clustering algorithms — one a k-constrained, and the other an unconstrained algorithm. Our k-constrained clustering algorith...
Oleksandr Grygorash, Yan Zhou, Zach Jorgensen
RECOMB
2008
Springer
16 years 6 months ago
Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations
We describe algorithms to explore the space of all possible reconciliations between a gene tree and a species tree. We propose an algorithm for generating a random reconciliation, ...
Jean-Philippe Doyon, Cedric Chauve, Sylvie Hamel
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
15 years 11 months ago
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
Aswath Manohar, Serafim Batzoglou