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» Optimal phylogenetic reconstruction
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ICIP
2007
IEEE
15 years 11 months ago
Dart: A Fast Heuristic Algebraic Reconstruction Algorithm for Discrete Tomography
Discrete tomography (DT) is concerned with the tomographic reconstruction of images that consist of only a small number of gray levels. DT reconstruction problems are usually unde...
Kees Joost Batenburg, Jan Sijbers
RECOMB
2005
Springer
15 years 9 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
BMCBI
2007
160views more  BMCBI 2007»
14 years 9 months ago
Dendroscope: An interactive viewer for large phylogenetic trees
Background: Research in evolution requires software for visualizing and editing phylogenetic trees, for increasingly very large datasets, such as arise in expression analysis or m...
Daniel H. Huson, Daniel C. Richter, Christian Raus...
RECOMB
2006
Springer
15 years 9 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
IPPS
2009
IEEE
15 years 4 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell