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» Optimal phylogenetic reconstruction
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EVOW
2004
Springer
15 years 3 months ago
Multi-objective Sensor Planning for Efficient and Accurate Object Reconstruction
A novel approach for sensor planning, which incorporates multi-objective optimization principals into the autonomous design of sensing strategies, is presented. The study addresses...
Enrique Dunn, Gustavo Olague
ICDT
2010
ACM
141views Database» more  ICDT 2010»
15 years 3 months ago
The Complexity of Rooted Phylogeny problems
Several computational problems in phylogenetic reconstruction can be formulated as restrictions of the following general problem: given a formula in conjunctive normal form where ...
Manuel Bodirsky, Jens K. Mueller
ALMOB
2008
131views more  ALMOB 2008»
14 years 12 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
BMCBI
2007
120views more  BMCBI 2007»
14 years 12 months ago
Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
Background: When aligning several hundreds or thousands of sequences, such as epidemic virus sequences or homologous/orthologous sequences of some big gene families, to reconstruc...
Arthur Chun-Chieh Shih, D. T. Lee, Chin-Lin Peng, ...
85
Voted
BMCBI
2008
86views more  BMCBI 2008»
14 years 12 months ago
Predicting protein linkages in bacteria: Which method is best depends on task
Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...