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2006
IEEE
15 years 6 months ago
Optimizing MPI collective communication by orthogonal structures
Many parallel applications from scientific computing use MPI collective communication operations to collect or distribute data. Since the execution times of these communication op...
Matthias Kühnemann, Thomas Rauber, Gudula R&u...
BMCBI
2002
108views more  BMCBI 2002»
15 years 5 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
SIGMOD
2006
ACM
232views Database» more  SIGMOD 2006»
16 years 6 months ago
To search or to crawl?: towards a query optimizer for text-centric tasks
Text is ubiquitous and, not surprisingly, many important applications rely on textual data for a variety of tasks. As a notable example, information extraction applications derive...
Panagiotis G. Ipeirotis, Eugene Agichtein, Pranay ...
BMCBI
2005
178views more  BMCBI 2005»
15 years 6 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
WSC
2001
15 years 7 months ago
Simulation of a night taxi-bus service for the historical center of Rome
The Municipality of Rome plans to introduce a taxi-bus system as a night service. A micro-simulation model was developed to estimate the needed information. Two major topics regar...
Thomas Schulze, Marco Lemessi, Francesco Filippi