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    » Optimization Multiple Sequence Alignment Scheme in DC-BTA
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    BIBE
    2007
    IEEE
    128views Bioinformatics» more  BIBE 2007»
    QOMA2: Optimizing the alignment of many sequences
    15 years 3 months ago
    QOMA2: Optimizing the alignment of many sequences
    Download  www.cise.ufl.edu
    Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
    Xu Zhang, Tamer Kahveci
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    WABI
    2007
    Springer
    123views Bioinformatics» more  WABI 2007»
    Inverse Sequence Alignment from Partial Examples
    15 years 3 months ago
    Inverse Sequence Alignment from Partial Examples
    Download  www.cs.arizona.edu
    When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
    Eagu Kim, John D. Kececioglu
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    PSB
    2008
    85views Applied Computing» more  PSB 2008»
    Local Reliability Measures from Sets of Co-Optimal Multiple Sequence Alignments
    14 years 11 months ago
    Local Reliability Measures from Sets of Co-Optimal Multiple Sequence Alignments
    Download  psb.stanford.edu
    Giddy Landan, Dan Grauer
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    BMCBI
    2007
    66views more  BMCBI 2007»
    Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
    14 years 9 months ago
    Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
    Download  www.inf.fu-berlin.de
    Markus Bauer, Gunnar W. Klau, Knut Reinert
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    JCB
    2006
    84views more  JCB 2006»
    Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds
    14 years 9 months ago
    Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds
    Download  ww2.cs.mu.oz.au
    Arun Siddharth Konagurthu, Peter J. Stuckey
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