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RECOMB
2004
Springer
15 years 12 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
CIDR
2007
141views Algorithms» more  CIDR 2007»
15 years 1 months ago
Fragmentation in Large Object Repositories
Fragmentation leads to unpredictable and degraded application performance. While these problems have been studied in detail for desktop filesystem workloads, this study examines n...
Russell Sears, Catharine van Ingen
BMCBI
2005
142views more  BMCBI 2005»
14 years 11 months ago
High performance workflow implementation for protein surface characterization using grid technology
Background: This study concerns the development of a high performance workflow that, using grid technology, correlates different kinds of Bioinformatics data, starting from the ba...
Ivan Merelli, Giulia Morra, Daniele D'Agostino, An...
RECOMB
2005
Springer
15 years 12 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
BMCBI
2008
137views more  BMCBI 2008»
14 years 11 months ago
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
Background: Microarray experiments generate vast amounts of data. The functional context of differentially expressed genes can be assessed by querying the Gene Ontology (GO) datab...
Hans A. Kestler, André Müller, Johann ...