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» Optimization problems in multiple-interval graphs
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BMCBI
2010
183views more  BMCBI 2010»
14 years 10 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
WALCOM
2010
IEEE
290views Algorithms» more  WALCOM 2010»
15 years 5 months ago
The Covert Set-Cover Problem with Application to Network Discovery
We address a version of the set-cover problem where we do not know the sets initially (and hence referred to as covert) but we can query an element to find out which sets contain ...
Sandeep Sen, V. N. Muralidhara
FOCS
2000
IEEE
15 years 1 months ago
Approximating the single source unsplittable min-cost flow problem
Abstract. In the single source unsplittable min-cost flow problem, commodities must be routed simultaneously from a common source vertex to certain destination vertices in a given ...
Martin Skutella
LSSC
2007
Springer
15 years 4 months ago
An Ant-Based Model for Multiple Sequence Alignment
Abstract. Multiple sequence alignment is a key process in today’s biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing so...
Frédéric Guinand, Yoann Pigné
CGO
2007
IEEE
15 years 4 months ago
On the Complexity of Register Coalescing
Memory transfers are becoming more important to optimize, for both performance and power consumption. With this goal in mind, new register allocation schemes are developed, which ...
Florent Bouchez, Alain Darte, Fabrice Rastello