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» Optimization problems in multiple-interval graphs
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GCB
2004
Springer
92views Biometrics» more  GCB 2004»
15 years 3 months ago
Syntenic Layout of Two Assemblies of Related Genomes
: To facilitate research in comparative genomics, sequencing projects are increasingly aimed at assembling the genomes of closely related organisms. Given two incomplete assemblies...
Olaf Delgado Friedrichs, Aaron L. Halpern, Ross Li...
CORR
2010
Springer
82views Education» more  CORR 2010»
14 years 10 months ago
Removing Local Extrema from Imprecise Terrains
In this paper, we study imprecise terrains, that is, triangulated terrains with a vertical error interval in the vertices. We study the problem of removing as many local extrema (...
Chris Gray, Frank Kammer, Maarten Löffler, Ro...
TCAD
2008
97views more  TCAD 2008»
14 years 9 months ago
Encoding Large Asynchronous Controllers With ILP Techniques
State encoding is one of the most difficult problems in the synthesis of asynchronous controllers. This paper presents a method that can solve the problem of large controllers spec...
Josep Carmona, Jordi Cortadella
EDBT
2006
ACM
120views Database» more  EDBT 2006»
15 years 10 months ago
Query Planning in the Presence of Overlapping Sources
Navigational queries on Web-accessible life science sources pose unique query optimization challenges. The objects in these sources are interconnected to objects in other sources, ...
Jens Bleiholder, Samir Khuller, Felix Naumann, Lou...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
15 years 4 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...