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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
16 years 22 days ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
CGO
2007
IEEE
16 years 21 days ago
Microarchitecture Sensitive Empirical Models for Compiler Optimizations
This paper proposes the use of empirical modeling techniques for building microarchitecture sensitive models for compiler optimizations. The models we build relate program perform...
Kapil Vaswani, Matthew J. Thazhuthaveetil, Y. N. S...
GECCO
2007
Springer
135views Optimization» more  GECCO 2007»
16 years 16 days ago
A cumulative evidential stopping criterion for multiobjective optimization evolutionary algorithms
In this work we present a novel and efficient algorithm– independent stopping criterion, called the MGBM criterion, suitable for Multiobjective Optimization Evolutionary Algorit...
Luis Martí, Jesús García, Ant...
GECCO
2007
Springer
211views Optimization» more  GECCO 2007»
16 years 16 days ago
An extremal optimization search method for the protein folding problem: the go-model example
The protein folding problem consists of predicting the functional (native) structure of the protein given its linear sequence of amino acids. Despite extensive progress made in un...
Alena Shmygelska
ICDE
2005
IEEE
101views Database» more  ICDE 2005»
15 years 12 months ago
Optimization of Nested XQuery Expressions with Orderby Clauses
— XQuery, the defacto XML query language, is a functional language with operational semantics, which precludes the direct application of classical query optimization techniques. ...
Song Wang, Elke A. Rundensteiner, Murali Mani