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SAC
2009
ACM
16 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
SC
2009
ACM
16 years 2 months ago
Enabling high-fidelity neutron transport simulations on petascale architectures
The UNIC code is being developed as part of the DOE’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. UNIC is an unstructured, deterministic neutron transport c...
Dinesh K. Kaushik, Micheal Smith, Allan Wollaber, ...
SC
2009
ACM
16 years 2 months ago
FACT: fast communication trace collection for parallel applications through program slicing
A proper understanding of communication patterns of parallel applications is important to optimize application performance and design better communication subsystems. Communicatio...
Jidong Zhai, Tianwei Sheng, Jiangzhou He, Wenguang...
SC
2009
ACM
16 years 2 months ago
Autotuning multigrid with PetaBricks
Algorithmic choice is essential in any problem domain to realizing optimal computational performance. Multigrid is a prime example: not only is it possible to make choices at the ...
Cy P. Chan, Jason Ansel, Yee Lok Wong, Saman P. Am...
SC
2009
ACM
16 years 2 months ago
Robust workflows for science and engineering
Scientific workflow tools allow users to specify complex computational experiments and provide a good framework for robust science and engineering. Workflows consist of pipelines ...
David Abramson, Blair Bethwaite, Colin Enticott, S...
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