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BMCBI
2007
166views more  BMCBI 2007»
15 years 3 months ago
How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
Background: The search for enriched features has become widely used to characterize a set of genes or proteins. A key aspect of this technique is its ability to identify correlati...
Roland Barriot, David J. Sherman, Isabelle Dutour
BMCBI
2007
216views more  BMCBI 2007»
15 years 3 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
BMCBI
2007
126views more  BMCBI 2007»
15 years 3 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...
IJCSA
2008
108views more  IJCSA 2008»
15 years 3 months ago
Consistency Check Algorithms for Multi-Dimensional Preference Trade-Offs
: Skyline Queries have recently received a lot of attention due to their intuitive query capabilities. Following the concept of Pareto optimality all `best' database objects a...
Christoph Lofi, Wolf-Tilo Balke, Ulrich Güntz...
BMCBI
2007
142views more  BMCBI 2007»
15 years 3 months ago
Predicting and improving the protein sequence alignment quality by support vector regression
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Minho Lee, Chan-seok Jeong, Dongsup Kim
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