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» Optimized mixed Markov models for motif identification
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BMCBI
2002
108views more  BMCBI 2002»
14 years 9 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
CDC
2010
IEEE
114views Control Systems» more  CDC 2010»
14 years 4 months ago
On subspace identification of cascade structured systems
Subspace identification has proven useful when identifying identifying multi-input multi-output systems. It is, however, important in many applications to take a priori structural ...
Per Hagg, Bo Wahlberg, Henrik Sandberg
ALGORITHMICA
2010
107views more  ALGORITHMICA 2010»
14 years 9 months ago
A Universal Online Caching Algorithm Based on Pattern Matching
We present a universal algorithm for the classical online problem of caching or demand paging. We consider the caching problem when the page request sequence is drawn from an unkn...
Gopal Pandurangan, Wojciech Szpankowski
PAMI
2008
189views more  PAMI 2008»
14 years 9 months ago
Detecting Objects of Variable Shape Structure With Hidden State Shape Models
This paper proposes a method for detecting object classes that exhibit variable shape structure in heavily cluttered images. The term "variable shape structure" is used t...
Jingbin Wang, Vassilis Athitsos, Stan Sclaroff, Ma...
KDD
2004
ACM
237views Data Mining» more  KDD 2004»
15 years 9 months ago
Bayesian Model-Averaging in Unsupervised Learning From Microarray Data
Unsupervised identification of patterns in microarray data has been a productive approach to uncovering relationships between genes and the biological process in which they are in...
Mario Medvedovic, Junhai Guo