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» Optimizing Complex Loss Functions in Structured Prediction
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CP
2009
Springer
15 years 10 months ago
Coalition Structure Generation Utilizing Compact Characteristic Function Representations
This paper presents a new way of formalizing the Coalition Structure Generation problem (CSG), so that we can apply constraint optimization techniques to it. Forming effective coal...
Naoki Ohta, Vincent Conitzer, Ryo Ichimura, Yuko S...
BMCBI
2010
116views more  BMCBI 2010»
14 years 9 months ago
Optimization algorithms for functional deimmunization of therapeutic proteins
Background: To develop protein therapeutics from exogenous sources, it is necessary to mitigate the risks of eliciting an anti-biotherapeutic immune response. A key aspect of the ...
Andrew S. Parker, Wei Zheng, Karl E. Griswold, Chr...
NIPS
2008
14 years 11 months ago
Structured ranking learning using cumulative distribution networks
Ranking is at the heart of many information retrieval applications. Unlike standard regression or classification in which we predict outputs independently, in ranking we are inter...
Jim C. Huang, Brendan J. Frey
BMCBI
2004
133views more  BMCBI 2004»
14 years 9 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy
BMCBI
2005
84views more  BMCBI 2005»
14 years 9 months ago
A method of precise mRNA/DNA homology-based gene structure prediction
Background: Accurate and automatic gene finding and structural prediction is a common problem in bioinformatics, and applications need to be capable of handling non-canonical spli...
Alexander G. Churbanov, Mark Pauley, Daniel Quest,...