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RECOMB
2003
Springer
15 years 10 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
ICML
2006
IEEE
15 years 10 months ago
Active learning via transductive experimental design
This paper considers the problem of selecting the most informative experiments x to get measurements y for learning a regression model y = f(x). We propose a novel and simple conc...
Kai Yu, Jinbo Bi, Volker Tresp
RECOMB
2004
Springer
15 years 10 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
KDD
2009
ACM
215views Data Mining» more  KDD 2009»
15 years 10 months ago
Large-scale sparse logistic regression
Logistic Regression is a well-known classification method that has been used widely in many applications of data mining, machine learning, computer vision, and bioinformatics. Spa...
Jun Liu, Jianhui Chen, Jieping Ye
CHI
2007
ACM
15 years 10 months ago
Modeling human performance of pen stroke gestures
This paper presents a quantitative human performance model of making single-stroke pen gestures within certain error constraints in terms of production time. Computed from the pro...
Xiang Cao, Shumin Zhai