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BMCBI
2010
154views more  BMCBI 2010»
15 years 5 months ago
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
Background: A major goal of molecular biology is determining the mechanisms that control the transcription of genes. Motif Enrichment Analysis (MEA) seeks to determine which DNA-b...
Robert C. McLeay, Timothy L. Bailey
GLVLSI
2005
IEEE
124views VLSI» more  GLVLSI 2005»
15 years 10 months ago
A first look at the interplay of code reordering and configurable caches
The instruction cache is a popular target for optimizations of microprocessor-based systems because of the cache’s high impact on system performance and power, and because of th...
Ann Gordon-Ross, Frank Vahid, Nikil Dutt
BIOINFORMATICS
2007
190views more  BIOINFORMATICS 2007»
15 years 4 months ago
Towards clustering of incomplete microarray data without the use of imputation
Motivation: Clustering technique is used to find groups of genes that show similar expression patterns under multiple experimental conditions. Nonetheless, the results obtained by...
Dae-Won Kim, Ki Young Lee, Kwang H. Lee, Doheon Le...
PLDI
2003
ACM
15 years 10 months ago
Points-to analysis using BDDs
This paper reports on a new approach to solving a subset-based points-to analysis for Java using Binary Decision Diagrams (BDDs). In the model checking community, BDDs have been s...
Marc Berndl, Ondrej Lhoták, Feng Qian, Laur...
IWOMP
2009
Springer
15 years 11 months ago
Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs
The UTS benchmark is used to evaluate task parallelism in OpenMP 3.0 as implemented in a number of recently released compilers and run-time systems. UTS performs parallel search of...
Stephen Olivier, Jan Prins