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» Over-optimism in bioinformatics: an illustration
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CIBCB
2009
IEEE
14 years 11 months ago
Improved prediction of trans-membrane spans in proteins using an artificial neural network
Tools for the identification of trans-membrane spans from the protein sequence are widely used in the experimental community. Computational structural biology seeks to increase the...
Julia Koehler, Ralf Mueller, Jens Meiler
DILS
2010
Springer
14 years 11 months ago
Search Computing: Integrating Ranked Data in the Life Sciences
Search computing has been proposed to support the integration of the results of search engines with other data and computational resources. In essence, in search computing, search ...
Marco Masseroli, Norman W. Paton, Giorgio Ghisalbe...
JCB
2008
108views more  JCB 2008»
14 years 9 months ago
Asymptotics of RNA Shapes
Abstract. RNA shapes, introduced by Giegerich et al. (17), provide a useful classification of the branching complexity for RNA secondary structures. In this paper, we derive an exa...
W. A. Lorenz, Yann Ponty, Peter Clote
JMLR
2008
148views more  JMLR 2008»
14 years 9 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
PR
2006
116views more  PR 2006»
14 years 9 months ago
Shared farthest neighbor approach to clustering of high dimensionality, low cardinality data
Clustering algorithms are routinely used in biomedical disciplines, and are a basic tool in bioinformatics. Depending on the task at hand, there are two most popular options, the ...
Stefano Rovetta, Francesco Masulli