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» Over-optimism in bioinformatics: an illustration
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BIBE
2008
IEEE
150views Bioinformatics» more  BIBE 2008»
14 years 10 months ago
Automatic DNA microarray gridding based on Support Vector Machines
This paper presents a novel method for DNA microarray gridding based on Support Vector Machine (SVM) classifiers. It employs a set of soft-margin SVMs to estimate the lines of the ...
Dimitris G. Bariamis, Dimitris Maroulis, Dimitrios...
ISBRA
2007
Springer
15 years 4 months ago
Clustering Algorithms Optimizer: A Framework for Large Datasets
Clustering algorithms are employed in many bioinformatics tasks, including categorization of protein sequences and analysis of gene-expression data. Although these algorithms are r...
Roy Varshavsky, David Horn, Michal Linial
BIOINFORMATICS
2007
83views more  BIOINFORMATICS 2007»
14 years 10 months ago
Exploring biological network structure using exponential random graph models
Motivation: The functioning of biological networks depends in large part on their complex underlying structure. When studying their systemic nature many modeling approaches focus ...
Zachary M. Saul, Vladimir Filkov
PRIB
2009
Springer
15 years 2 months ago
Syntactic Pattern Recognition Using Finite Inductive Strings
A syntactic pattern recognition technique is described based upon a mathematical principle associated with finite sequences of symbols. The technique allows for fast recognition of...
Paul S. Fisher, Howard Fisher, Jinsuk Baek, Cleopa...
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis