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» Over-optimism in bioinformatics: an illustration
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BIBE
2006
IEEE
160views Bioinformatics» more  BIBE 2006»
15 years 3 months ago
Methods for Random Modularization of Biological Networks
— Biological networks are formalized summaries of our knowledge about interactions among biological system components, like genes, proteins, or metabolites. From their global top...
Zachary M. Saul, Vladimir Filkov
BIBE
2007
IEEE
159views Bioinformatics» more  BIBE 2007»
15 years 1 months ago
Non-negative Tensor Factorization Based on Alternating Large-scale Non-negativity-constrained Least Squares
Non-negative matrix factorization (NMF) and non-negative tensor factorization (NTF) have attracted much attention and have been successfully applied to numerous data analysis probl...
Hyunsoo Kim, Haesun Park, Lars Eldén
CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
15 years 1 months ago
A Theoretical Analysis of Gene Selection
A great deal of recent research has focused on the challenging task of selecting differentially expressed genes from microarray data (`gene selection'). Numerous gene selecti...
Sach Mukherjee, Stephen J. Roberts
CSB
2004
IEEE
126views Bioinformatics» more  CSB 2004»
15 years 1 months ago
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer
Boosted PRIM (Patient Rule Induction Method) is a new algorithm developed for two-class classification problems. PRIM is a variation of those Tree-Based methods ( [4] Ch9.3), seek...
Pei Wang, Young Kim, Jonathan R. Pollack, Robert T...
BIBE
2001
IEEE
193views Bioinformatics» more  BIBE 2001»
15 years 1 months ago
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data
Effective analysis of genome sequences and associated functional data requires access to many different kinds of biological information. For example, when analysing gene expressio...
Mike Cornell, Norman W. Paton, Shengli Wu, Carole ...