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115
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VLSISP
2010
14 years 10 months ago
2010
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
120
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AIPS
2009
15 years 4 months ago
2009
In order to scale with modern processors, planning algorithms must become multi-threaded. In this paper, we present parallel shared-memory algorithms for two problems that underli...
131
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SPAA
1996
ACM
15 years 8 months ago
1996
ACM
In this paper, we analyze the performance of parallel multithreaded algorithms that use dag-consistent distributed shared memory. Specifically, we analyze execution time, page fau...
166
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HIPC
2009
Springer
15 years 1 months ago
2009
Springer
Stream computing research is moving from terascale to petascale levels. It aims to rapidly analyze data as it streams in from many sources and make decisions with high speed and a...
136
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SC
2003
ACM
15 years 9 months ago
2003
ACM
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...