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» Parallel Algorithms for Cellular Models Simulation
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BMCBI
2008
130views more  BMCBI 2008»
15 years 2 months ago
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Background: Understanding how proteins fold is essential to our quest in discovering how life works at the molecular level. Current computation power enables researchers to produc...
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yus...
ICPP
2008
IEEE
15 years 8 months ago
On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis
Numerical simulations in computational physics, biology, and finance, often require the use of high quality and efficient parallel random number generators. We design and optimi...
David A. Bader, Aparna Chandramowlishwaran, Virat ...
ICCAD
2003
IEEE
132views Hardware» more  ICCAD 2003»
15 years 11 months ago
A Sum-over-Paths Impulse-Response Moment-Extraction Algorithm for IC-Interconnect Networks: Verification, Coupled RC Lines
We have created a stochastic impulse-response (IR) momentextraction algorithm for RC circuit networks. It employs a newly discovered Feynman Sum-over-Paths Postulate. Full paralle...
Yannick L. Le Coz, Dhivya Krishna, Dusan M. Petran...
VRML
2004
ACM
15 years 7 months ago
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
Increasingly, biology researchers and medical practitioners are using computational tools to model and analyze dynamic systems across scales from the macro to the cellular to the ...
Nicholas F. Polys, Doug A. Bowman, Chris North, Re...
IPPS
2005
IEEE
15 years 7 months ago
Reconfigurable Object Consistency Model
Consistency is an important issue in Distributed Shared Memory (DSM) systems. These systems share a set of objects or virtual memory pages. The data sharing enables the applicatio...
Christiane V. Pousa, Luís Fabrício W...