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BMCBI
2010
175views more  BMCBI 2010»
14 years 10 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
SIGOPS
2010
162views more  SIGOPS 2010»
14 years 8 months ago
Visual and algorithmic tooling for system trace analysis: a case study
Despite advances in the application of automated statistical and machine learning techniques to system log and trace data there will always be a need for human analysis of machine...
Wim De Pauw, Steve Heisig
PVM
2010
Springer
14 years 8 months ago
Toward Performance Models of MPI Implementations for Understanding Application Scaling Issues
Abstract. Designing and tuning parallel applications with MPI, particularly at large scale, requires understanding the performance implications of different choices of algorithms ...
Torsten Hoefler, William Gropp, Rajeev Thakur, Jes...
HPCA
2001
IEEE
15 years 10 months ago
Automatically Mapping Code on an Intelligent Memory Architecture
This paper presents an algorithm to automatically map code on a generic intelligent memory system that consists of a host processor and a simpler memory processor. To achieve high...
Jaejin Lee, Yan Solihin, Josep Torrellas
IPPS
2010
IEEE
14 years 8 months ago
Performance evaluation of concurrent collections on high-performance multicore computing systems
This paper is the first extensive performance study of a recently proposed parallel programming model, called Concurrent Collections (CnC). In CnC, the programmer expresses her co...
Aparna Chandramowlishwaran, Kathleen Knobe, Richar...