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IPPS
2006
IEEE
15 years 4 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
IPPS
2010
IEEE
14 years 8 months ago
Performance evaluation of concurrent collections on high-performance multicore computing systems
This paper is the first extensive performance study of a recently proposed parallel programming model, called Concurrent Collections (CnC). In CnC, the programmer expresses her co...
Aparna Chandramowlishwaran, Kathleen Knobe, Richar...
SCHOLARPEDIA
2011
14 years 24 days ago
N-body simulations
Abstract. Scientists’ ability to generate and collect massive-scale datasets is increasing. As a result, constraints in data analysis capability rather than limitations in the av...
PPAM
2007
Springer
15 years 4 months ago
Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware
Abstract. Whole genome comparison compares (aligns) two genome sequences assuming that analogous characteristics may be found. In this paper, we present an SIMD version of the Smit...
Arpith C. Jacob, Marcin Paprzycki, Maria Ganzha, S...
IEEEPACT
1998
IEEE
15 years 2 months ago
Efficient Methods for Multi-Dimensional Array Redistribution
In this paper, we present efficient methods for multidimensional array redistribution. Based on the previous work, the basic-cycle calculation technique, we present a basic-block ...
Yeh-Ching Chung, Ching-Hsien Hsu