As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
This paper is the first extensive performance study of a recently proposed parallel programming model, called Concurrent Collections (CnC). In CnC, the programmer expresses her co...
Abstract. Scientists’ ability to generate and collect massive-scale datasets is increasing. As a result, constraints in data analysis capability rather than limitations in the av...
Abstract. Whole genome comparison compares (aligns) two genome sequences assuming that analogous characteristics may be found. In this paper, we present an SIMD version of the Smit...
Arpith C. Jacob, Marcin Paprzycki, Maria Ganzha, S...
In this paper, we present efficient methods for multidimensional array redistribution. Based on the previous work, the basic-cycle calculation technique, we present a basic-block ...