We study the role that parallelism plays in time complexariants of Winfree’s abstract Tile Assembly Model (aTAM), a model of molecular algorithmic self-assembly. In the “hiera...
Abstract— Optimization of a similarity metric is an essential component in most medical image registration approaches based on image intensities. In this paper, two new, determin...
This paper presents algorithms and lower bounds for several fundamental problems on the Exclusive Read, Concurrent Write Parallel Random Access Machine (ERCW PRAM) and some result...
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Multicore processors are marking the beginning of a new era of computing where massive parallelism is available and necessary. Slightly slower but easy to parallelize kernels are ...