158 search results - page 10 / 32 » Parallel Biological Sequence Comparison Using Prefix Computa... |
105
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ISHPC
2003
Springer
15 years 6 months ago
2003
Springer
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
128
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BMCBI
2010
14 years 10 months ago
2010
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
129
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BMCBI
2004
15 years 19 days ago
2004
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
113
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IPPS
2010
IEEE
14 years 10 months ago
2010
IEEE
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
101
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JCB
2007
15 years 20 days ago
2007
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...