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» Parallel EST Clustering
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97
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BIBM
2010
IEEE
222views Bioinformatics» more  BIBM 2010»
14 years 10 months ago
CEO a cloud epistasis computing model in GWAS
The 1000 Genome project has made available a large number of single nucleotide polymorphisms (SNPs) for genome-wide association studies (GWAS). However, the large number of SNPs ha...
Zhengkui Wang, Yue Wang, Kian-Lee Tan, Limsoon Won...
178
Voted
PC
2011
318views Management» more  PC 2011»
14 years 7 months ago
High-performance message-passing over generic Ethernet hardware with Open-MX
In the last decade, cluster computing has become the most popular high-performance computing architecture. Although numerous technological innovations have been proposed to improv...
Brice Goglin
107
Voted
IPPS
2008
IEEE
15 years 7 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
113
Voted
IPPS
2008
IEEE
15 years 7 months ago
Scaling alltoall collective on multi-core systems
MPI Alltoall is one of the most communication intense collective operation used in many parallel applications. Recently, the supercomputing arena has witnessed phenomenal growth o...
Rahul Kumar, Amith R. Mamidala, Dhabaleswar K. Pan...
ESCIENCE
2007
IEEE
15 years 7 months ago
Distributed and Generic Maximum Likelihood Evaluation
This paper presents GMLE 1 , a generic and distributed framework for maximum likelihood evaluation. GMLE is currently being applied to astroinformatics for determining the shape o...
Travis J. Desell, Nathan Cole, Malik Magdon-Ismail...