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88
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ICCS
2001
Springer
15 years 1 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
CODES
2010
IEEE
14 years 6 months ago
Automatic memory partitioning: increasing memory parallelism via data structure partitioning
In high-level synthesis, pipelined designs are often restricted by the number of memory banks available to the synthesis system. Using multiple memory banks can improve the perfor...
Yosi Ben-Asher, Nadav Rotem
89
Voted
CCE
2004
14 years 9 months ago
Stochastic maximum principle for optimal control under uncertainty
Optimal control problems involve the difficult task of determining time-varying profiles through dynamic optimization. Such problems become even more complex in practical situatio...
Vicente Rico-Ramírez, Urmila M. Diwekar
SYNTHESE
2008
84views more  SYNTHESE 2008»
14 years 9 months ago
How experimental algorithmics can benefit from Mayo's extensions to Neyman-Pearson theory of testing
Although theoretical results for several algorithms in many application domains were presented during the last decades, not all algorithms can be analyzed fully theoretically. Exp...
Thomas Bartz-Beielstein
CCECE
2006
IEEE
15 years 3 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...