This paper proposes a comprehensive modeling architecture for workloads on parallel computers using Markov chains in combination with state dependent empirical distribution functi...
In this paper, we present a novel approach for parallel sorting on stream processing architectures. It is based on adaptive bitonic sorting. For sorting n values utilizing p strea...
The increasing significance of RNAs in transcriptional or post-transcriptional gene regulation processes has generated considerable interest towards the prediction of RNA folding ...
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed ...
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
—The performance bottleneck for many scientific applications is the cost of memory access inside linear algebra kernels. Tuning such kernels for memory efficiency is a complex ...