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» Parallel Generation of Pseudo-Random Sequences
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HPDC
2010
IEEE
14 years 11 months ago
A hybrid Markov chain model for workload on parallel computers
This paper proposes a comprehensive modeling architecture for workloads on parallel computers using Markov chains in combination with state dependent empirical distribution functi...
Anne Krampe, Joachim Lepping, Wiebke Sieben
IPPS
2006
IEEE
15 years 4 months ago
GPU-ABiSort: optimal parallel sorting on stream architectures
In this paper, we present a novel approach for parallel sorting on stream processing architectures. It is based on adaptive bitonic sorting. For sorting n values utilizing p strea...
Alexander Greß, Gabriel Zachmann
HPDC
2010
IEEE
14 years 11 months ago
Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
The increasing significance of RNAs in transcriptional or post-transcriptional gene regulation processes has generated considerable interest towards the prediction of RNA folding ...
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed ...
BMCBI
2011
14 years 1 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
IPPS
2008
IEEE
15 years 4 months ago
Build to order linear algebra kernels
—The performance bottleneck for many scientific applications is the cost of memory access inside linear algebra kernels. Tuning such kernels for memory efficiency is a complex ...
Jeremy G. Siek, Ian Karlin, Elizabeth R. Jessup