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» Parallel Generation of Pseudo-Random Sequences
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ISHPC
2003
Springer
15 years 3 months ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
BMCBI
2011
14 years 1 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
ICS
2007
Tsinghua U.
15 years 4 months ago
Sensitivity analysis for automatic parallelization on multi-cores
Sensitivity Analysis (SA) is a novel compiler technique that complements, and integrates with, static automatic parallelization analysis for the cases when relevant program behavi...
Silvius Rus, Maikel Pennings, Lawrence Rauchwerger
ICS
2001
Tsinghua U.
15 years 2 months ago
Multiplex: unifying conventional and speculative thread-level parallelism on a chip multiprocessor
Recent proposals for Chip Multiprocessors (CMPs) advocate speculative, or implicit, threading in which the hardware employs prediction to peel off instruction sequences (i.e., imp...
Chong-liang Ooi, Seon Wook Kim, Il Park, Rudolf Ei...
PODC
2000
ACM
15 years 2 months ago
Debugging distributed programs using controlled re-execution
Distributed programs are hard to write. A distributed debugger equipped with the mechanism to re-execute the traced computation in a controlled fashion can greatly facilitate the ...
Neeraj Mittal, Vijay K. Garg