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167
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CLUSTER
2003
IEEE
15 years 10 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
PVM
2001
Springer
15 years 9 months ago
Parallel IO Support for Meta-computing Applications: MPI_Connect IO Applied to PACX-MPI
Parallel IO (PIO) support for larger scale computing is becoming more important as application developers better understand its importance in reducing overall execution time by avo...
Graham E. Fagg, Edgar Gabriel, Michael M. Resch, J...
181
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ICPP
2000
IEEE
15 years 9 months ago
A Scalable Parallel Subspace Clustering Algorithm for Massive Data Sets
Clustering is a data mining problem which finds dense regions in a sparse multi-dimensional data set. The attribute values and ranges of these regions characterize the clusters. ...
Harsha S. Nagesh, Sanjay Goil, Alok N. Choudhary
IPPS
1997
IEEE
15 years 8 months ago
Control Schemes in a Generalized Utility for Parallel Branch-and-Bound Algorithms
Branch-and-bound algorithms are general methods applicable to various combinatorial optimization problems and parallelization is one of the most hopeful methods to improve these a...
Yuji Shinano, Kenichi Harada, Ryuichi Hirabayashi
161
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BMCBI
2010
153views more  BMCBI 2010»
15 years 4 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...