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IPPS
2006
IEEE
15 years 4 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
IPPS
2005
IEEE
15 years 3 months ago
RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation
Basic Local Alignment Search Tool (BLAST) is a standard computer application that molecular biologists use to search for sequence similarity in genomic databases. This report desc...
Krishna Muriki, Keith D. Underwood, Ron Sass
SPAA
2005
ACM
15 years 3 months ago
Using elimination to implement scalable and lock-free FIFO queues
This paper shows for the first time that elimination, a scaling technique formerly applied only to counters and LIFO structures, can be applied to FIFO data structures, specific...
Mark Moir, Daniel Nussbaum, Ori Shalev, Nir Shavit
PVM
2005
Springer
15 years 3 months ago
Implementing Byte-Range Locks Using MPI One-Sided Communication
We present an algorithm for implementing byte-range locks using MPI passive-target one-sided communication. This algorithm is useful in any scenario in which multiple processes of ...
Rajeev Thakur, Robert B. Ross, Robert Latham
ICPP
2003
IEEE
15 years 3 months ago
Scalable Implementations of MPI Atomicity for Concurrent Overlapping I/O
For concurrent I/O operations, atomicity defines the results in the overlapping file regions simultaneously read/written by requesting processes. Atomicity has been well studied...
Wei-keng Liao, Alok N. Choudhary, Kenin Coloma, Ge...