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GECCO
2005
Springer
189views Optimization» more  GECCO 2005»
15 years 3 months ago
Molecular programming: evolving genetic programs in a test tube
We present a molecular computing algorithm for evolving DNA-encoded genetic programs in a test tube. The use of synthetic DNA molecules combined with biochemical techniques for va...
Byoung-Tak Zhang, Ha-Young Jang
GRID
2007
Springer
15 years 3 months ago
Integrating multi-level molecular simulations across heterogeneous resources
— Biomolecular simulations play a key role in the study of complex biological processes at microscopic levels in which macromolecules such as proteins are involved. The simulatio...
Yudong Sun, Steve McKeever, Kia Balali-Mood, Mark ...
HPDC
2000
IEEE
15 years 2 months ago
CAVEStudy: An Infrastructure for Computational Steering in Virtual Reality Environments
We present the CAVEStudy system that enables scientists to interactively steer a simulation from a virtual reality (VR) environment. No modification to the source code is necessa...
Luc Renambot, Henri E. Bal, Desmond Germans, Hans ...
WOB
2004
120views Bioinformatics» more  WOB 2004»
14 years 11 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
ICCS
2003
Springer
15 years 2 months ago
Scaling Molecular Dynamics to 3000 Processors with Projections: A Performance Analysis Case Study
Some of the most challenging applications to parallelize scalably are the ones that present a relatively small amount of computation per iteration. Multiple interacting performance...
Laxmikant V. Kalé, Sameer Kumar, Gengbin Zh...