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ICCS
2009
Springer
15 years 4 months ago
A Scalable and Adaptable Solution Framework within Components of the Community Climate System Model
Abstract. A framework for a fully implicit solution method is implemented into (1) the High Order Methods Modeling Environment (HOMME), which is a spectral element dynamical core o...
Katherine J. Evans, Damian W. I. Rouson, Andrew G....
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 4 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 7 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
ISCA
2007
IEEE
145views Hardware» more  ISCA 2007»
15 years 3 months ago
Mechanisms for store-wait-free multiprocessors
Store misses cause significant delays in shared-memory multiprocessors because of limited store buffering and ordering constraints required for proper synchronization. Today, prog...
Thomas F. Wenisch, Anastassia Ailamaki, Babak Fals...
CF
2010
ACM
15 years 2 months ago
Interval-based models for run-time DVFS orchestration in superscalar processors
We develop two simple interval-based models for dynamic superscalar processors. These models allow us to: i) predict with great accuracy performance and power consumption under va...
Georgios Keramidas, Vasileios Spiliopoulos, Stefan...