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134
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ACRI
2006
Springer
15 years 8 months ago
Parallel Simulation of Asynchronous Cellular Automata Evolution
For simulating physical and chemical processes on molecular level asynchronous cellular automata with probabilistic transition rules are widely used being sometimes referred to as ...
Olga L. Bandman
136
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HPCA
2008
IEEE
15 years 9 months ago
Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulation
Jeffrey Kuskin, Cliff Young, John P. Grossman, Bra...
106
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CPHYSICS
2006
95views more  CPHYSICS 2006»
15 years 2 months ago
Multibillion-atom molecular dynamics simulation: Design considerations for vector-parallel processing
Progress in adapting molecular dynamics algorithms for systems with short-range interactions to utilize the features of modern supercomputers is described. Efficient utilization o...
D. C. Rapaport
123
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FPL
2005
Springer
144views Hardware» more  FPL 2005»
15 years 8 months ago
Accelerating Molecular Dynamics Simulations With Configurable Circuits
Molecular Dynamics (MD) is of central importance to computational chemistry. Here we show that MD can be implemented efficiently on a COTS FPGA board, and that speedups from ¿½...
Yongfeng Gu, Tom Van Court, Martin C. Herbordt