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BMCBI
2010
198views more  BMCBI 2010»
15 years 2 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
121
Voted
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
15 years 8 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
148
Voted
SPAA
2012
ACM
13 years 4 months ago
Memory-mapping support for reducer hyperobjects
hyperobjects (reducers) provide a linguistic abstraction for dynamic multithreading that allows different branches of a parallel program to maintain coordinated local views of the...
I.-Ting Angelina Lee, Aamir Shafi, Charles E. Leis...
133
Voted
CADE
2005
Springer
16 years 2 months ago
An Algorithm for Deciding BAPA: Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
EMSOFT
2004
Springer
15 years 8 months ago
Reactive process networks
Data flow process networks are a good model of computation for streaming multimedia applications incorporating audio, video and/or graphics streams. Process networks are concurre...
Marc Geilen, Twan Basten