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ARC
2007
Springer
123views Hardware» more  ARC 2007»
15 years 1 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
HPDC
2010
IEEE
14 years 10 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
ICS
2001
Tsinghua U.
15 years 2 months ago
Multiplex: unifying conventional and speculative thread-level parallelism on a chip multiprocessor
Recent proposals for Chip Multiprocessors (CMPs) advocate speculative, or implicit, threading in which the hardware employs prediction to peel off instruction sequences (i.e., imp...
Chong-liang Ooi, Seon Wook Kim, Il Park, Rudolf Ei...
95
Voted
IWMM
2010
Springer
118views Hardware» more  IWMM 2010»
15 years 2 months ago
Speculative parallelization using state separation and multiple value prediction
With the availability of chip multiprocessor (CMP) and simultaneous multithreading (SMT) machines, extracting thread level parallelism from a sequential program has become crucial...
Chen Tian, Min Feng, Rajiv Gupta
88
Voted
ISMB
1994
14 years 11 months ago
An Efficient Method for Multiple Sequence Alignment
Multiple sequence alignment has been a useful methodin the study of molecular evolution and sequence-structure relationships. This paper presents a newmethodfor multiple sequence ...
Jin Kim, Sakti Pramanik