Sciweavers

271 search results - page 9 / 55
» Parallel Multiple Sequence Alignment Using Speculative Compu...
Sort
View
BMCBI
2008
163views more  BMCBI 2008»
14 years 11 months ago
ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Background: Multiple sequence alignments are a fundamental tool for the comparative analysis of proteins and nucleic acids. However, large data sets are no longer manageable for v...
Alberto I. Roca, Albert E. Almada, Aaron C. Abajia...
CF
2008
ACM
15 years 1 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...
CIBCB
2007
IEEE
15 years 6 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
HPCA
1998
IEEE
15 years 4 months ago
The Potential for Using Thread-Level Data Speculation to Facilitate Automatic Parallelization
As we look to the future, and the prospect of a billion transistors on a chip, it seems inevitable that microprocessors will exploit having multiple parallel threads. To achieve t...
J. Gregory Steffan, Todd C. Mowry
ISMB
1997
15 years 1 months ago
Automated Alignment of RNA Sequences to Pseudoknotted Structures
Seq7 is a newprogramfor generating multiple structure-based alignments of RNAsequences. Byusing a variant of Dijkstra’s algorithm to find the shortest path through a specially c...
Jack E. Tabaska, Gary D. Stormo