In this paper we present BioOpera, an extensible process support system for cluster-aware computing. It features an intuitive way to specify computations, as well as improved supp...
We describe the use of component architecture in an area to which this approach has not been classically applied, the area of cluster system software. By "cluster system soft...
Narayan Desai, Rick Bradshaw, Ewing L. Lusk, Ralf ...
Commodity computer clusters are often composed of hundreds of computing nodes. These generally off-the-shelf systems are not designed for high reliability. Node failures therefore...
In this work we present a parallel algorithm for the solution of a least squares problem with structured matrices. This problem arises in many applications mainly related to digit...
Pedro Alonso, Antonio M. Vidal, Alexey L. Lastovet...
We present practical parallel algorithms using prefix computations for various problems that arise in pairwise comparison of biological sequences. We consider both constant and af...