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BMCBI
2008
104views more  BMCBI 2008»
14 years 11 months ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...
RECOMB
2008
Springer
15 years 11 months ago
DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework
Abstract. This paper presents an algorithm to detect lateral gene transfer (LGT) on the basis of pairwise evolutionary distances. The prediction is made from a likelihood ratio der...
Christophe Dessimoz, Daniel Margadant, Gaston H. G...
UAI
2008
15 years 19 days ago
Bayesian Out-Trees
A Bayesian treatment of latent directed graph structure for non-iid data is provided where each child datum is sampled with a directed conditional dependence on a single unknown p...
Tony Jebara
NAR
2007
153views more  NAR 2007»
14 years 10 months ago
PROMALS web server for accurate multiple protein sequence alignments
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grish...
ICDCS
2006
IEEE
15 years 5 months ago
Overlay Multicast with Inferred Link Capacity Correlations
We model the overlay using linear capacity constraints, which accurately and succinctly capture overlay link correlations. We show that finding a maximum-bandwidth multicast tree...
Ying Zhu, Baochun Li